updated doc

55a99c61 · lesgourg · 70e81d16 · 55a99c61 · 55a99c61 · 55a99c61
Commit 55a99c61 authored Sep 10, 2018 by lesgourg
--- a/doc/input/latex/class.aux
+++ b/doc/input/latex/class.aux
+\relax 
+\@writefile{toc}{\contentsline {section}{\numberline {1}Overall architecture of {\sc  class}}{2}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {1.1}Files and directories}{2}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {1.2}The ten-module backbone}{4}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {1.2.1}Ten tasks}{4}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {1.2.2}Ten structures}{5}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {1.2.3}Ten modules}{5}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {1.3}{\tt  main()} function(s)}{7}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {1.3.1}The {\tt  main.c} file}{7}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {1.3.2}The {\tt  test\_<...>.c} files}{8}}
+\@writefile{toc}{\contentsline {section}{\numberline {2}Input/output}{9}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {2.1}Input}{9}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {2.2}Output}{11}}
+\@writefile{toc}{\contentsline {section}{\numberline {3}General principles}{12}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Error management}{12}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Dynamical allocation of indices}{13}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.3}No hard coding}{13}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.4}Modifying the code}{13}}
+\@writefile{toc}{\contentsline {section}{\numberline {4}Units and equations}{13}}
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+++ b/doc/input/latex/class.log
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+\OT1/cmr/m/n/10 The main ex-e-cutable of \OT1/cmr/m/sc/10 class \OT1/cmr/m/n/10
+ is the func-tion \OT1/cmtt/m/n/10 main() \OT1/cmr/m/n/10 lo-cated in the file 
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+[]\OT1/cmtt/m/n/10 input[]init[]from[]arguments(argc, argv,&pr,&ba,&th,&pt,&tr,
+&pm,&sp,&nl,&le,&op,errmsg); 
+ []
+
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+\OT1/cmr/m/n/10 loop over dif-fer-ent pa-ram-e-ter val-ues. There is also a ver
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+[]\OT1/cmr/m/n/10 The syn-tax of the in-put files is ex-plained at the be-gin-n
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--- a/doc/input/latex/class.pdf
+++ b/doc/input/latex/class.pdf
--- a/doc/input/latex/class.synctex.gz
+++ b/doc/input/latex/class.synctex.gz
--- a/doc/manual/CLASS_MANUAL.pdf
+++ b/doc/manual/CLASS_MANUAL.pdf
--- a/doc/manual/html/annotated.html
+++ b/doc/manual/html/annotated.html
@@ -111,7 +111,7 @@ $(document).ready(function(){initNavTree('annotated.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
  <ul>
-    <li class="footer">Generated on Sat Mar 25 2017 10:54:45 for CLASS MANUAL by
+    <li class="footer">Generated on Mon Sep 10 2018 17:53:31 for CLASS MANUAL by
    <a href="http://www.doxygen.org/index.html">
    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
  </ul>

--- a/doc/manual/html/arrays_8h_source.html
+++ b/doc/manual/html/arrays_8h_source.html
@@ -90,7 +90,7 @@ $(document).ready(function(){initNavTree('arrays_8h_source.html','');});
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
  <ul>
    <li class="navelem"><a class="el" href="dir_d44c64559bbebec7f509842c48db8b23.html">include</a></li><li class="navelem"><b>arrays.h</b></li>
-    <li class="footer">Generated on Sat Mar 25 2017 10:54:44 for CLASS MANUAL by
+    <li class="footer">Generated on Mon Sep 10 2018 17:53:30 for CLASS MANUAL by
    <a href="http://www.doxygen.org/index.html">
    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
  </ul>

--- a/doc/manual/html/background_8c.html
+++ b/doc/manual/html/background_8c.html
@@ -117,6 +117,8 @@ Functions</h2></td></tr>
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 <tr class="separator:a5b0d8db279856b3c96aba08c83aa19d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7c4d314e8a6131c2d1ebfb2cd2c17946"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="background_8c.html#a7c4d314e8a6131c2d1ebfb2cd2c17946">background_free_noinput</a> (struct <a class="el" href="background_8h.html#structbackground">background</a> *pba)</td></tr>
+<tr class="separator:a7c4d314e8a6131c2d1ebfb2cd2c17946"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a61601a17447fc6a806921680d2e52c8f"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="background_8c.html#a61601a17447fc6a806921680d2e52c8f">background_free_input</a> (struct <a class="el" href="background_8h.html#structbackground">background</a> *pba)</td></tr>
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 <tr class="separator:ad2dc56f010363d90bb1ad8447a32baf9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aed2984c000b71ae610410cd1a5490966"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="background_8c.html#aed2984c000b71ae610410cd1a5490966">background_find_equality</a> (struct <a class="el" href="common_8h.html#structprecision">precision</a> *ppr, struct <a class="el" href="background_8h.html#structbackground">background</a> *pba)</td></tr>
+<tr class="separator:aed2984c000b71ae610410cd1a5490966"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a038afb8102e9f45af7524a59011c371f"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="background_8c.html#a038afb8102e9f45af7524a59011c371f">background_output_titles</a> (struct <a class="el" href="background_8h.html#structbackground">background</a> *pba, char titles[_MAXTITLESTRINGLENGTH_])</td></tr>
 <tr class="separator:a038afb8102e9f45af7524a59011c371f"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a0ff17dd11a557890bcd66920397828ad"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="background_8c.html#a0ff17dd11a557890bcd66920397828ad">background_output_data</a> (struct <a class="el" href="background_8h.html#structbackground">background</a> *pba, int number_of_titles, double *data)</td></tr>
@@ -474,7 +478,8 @@ Functions</h2></td></tr>
 <li>if shooting failed during input, catch the error here</li>
 <li>assign values to all indices in vectors of background quantities with <a class="el" href="background_8c.html#a8934d2c903bb4c78b1b6a33a8c56e293">background_indices()</a></li>
 <li>control that cosmological parameter values make sense</li>
-<li>this function integrates the background over time, allocates and fills the background table </li>
+<li>this function integrates the background over time, allocates and fills the background table</li>
+<li>this function finds and stores a few derived parameters at radiation-matter equality </li>
 </ul>

 </div>
@@ -513,6 +518,32 @@ Functions</h2></td></tr>
 </map>
 </div>

+</div>
+</div>
+<a id="a7c4d314e8a6131c2d1ebfb2cd2c17946"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7c4d314e8a6131c2d1ebfb2cd2c17946">&#9670;&nbsp;</a></span>background_free_noinput()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int background_free_noinput </td>
+          <td>(</td>
+          <td class="paramtype">struct <a class="el" href="background_8h.html#structbackground">background</a> *&#160;</td>
+          <td class="paramname"><em>pba</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>Free only the memory space NOT allocated through <a class="el" href="input_8c.html#a2ca13f55e0c5117997d052118a3395ae">input_read_parameters()</a></p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">pba</td><td>Input: pointer to background structure (to be freed) </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the error status </dd></dl>
+
 </div>
 </div>
 <a id="a61601a17447fc6a806921680d2e52c8f"></a>
@@ -711,6 +742,9 @@ Functions</h2></td></tr>
  </table>
  </dd>
 </dl>
+<p>Automatic q-sampling for this species </p><pre class="fragment">- in verbose mode, inform user of number of sampled momenta
+</pre><p> for background quantities</p>
+<p>Manual q-sampling for this species. Same sampling used for both perturbation and background sampling, since this will usually be a high precision setting anyway</p>
 <ul>
 <li>in verbose mode, inform user of number of sampled momenta for background quantities </li>
 </ul>
@@ -1022,6 +1056,43 @@ Functions</h2></td></tr>
 <li>set initial value of D and D' in RD. D will be renormalised later, but D' must be correct. </li>
 </ul>

+</div>
+</div>
+<a id="aed2984c000b71ae610410cd1a5490966"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aed2984c000b71ae610410cd1a5490966">&#9670;&nbsp;</a></span>background_find_equality()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int background_find_equality </td>
+          <td>(</td>
+          <td class="paramtype">struct <a class="el" href="common_8h.html#structprecision">precision</a> *&#160;</td>
+          <td class="paramname"><em>ppr</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">struct <a class="el" href="background_8h.html#structbackground">background</a> *&#160;</td>
+          <td class="paramname"><em>pba</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>Find the time of radiation/matter equality and store characteristic quantitites at that time in the background structure..</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ppr</td><td>Input: pointer to precision structure </td></tr>
+    <tr><td class="paramname">pba</td><td>Input/Output: pointer to background structure </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>the error status </dd></dl>
+
 </div>
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-    <li class="footer">Generated on Sat Mar 25 2017 10:54:44 for CLASS MANUAL by
+    <li class="footer">Generated on Mon Sep 10 2018 17:53:31 for CLASS MANUAL by
    <a href="http://www.doxygen.org/index.html">
    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
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    [ "background_initial_conditions", "background_8c.html#ad2dc56f010363d90bb1ad8447a32baf9", null ],
+    [ "background_find_equality", "background_8c.html#aed2984c000b71ae610410cd1a5490966", null ],
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 <div class="header">
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-<a href="#nested-classes">Data Structures</a>  </div>
+<a href="#nested-classes">Data Structures</a> &#124;
+<a href="#enum-members">Enumerations</a>  </div>
  <div class="headertitle">
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